Software

fairSIM - Free Analysis and Interactive Reconstruction for Structured Illumination Microscopy

An open-source SR-SIM reconstruction plugin for ImageJ / Fiji, able to reconstruct single-slice SR-SIM datasets.

All resources (ready-to-run plugin, source code, example datasets) are hosted on github: fairsim.org (a mirror is available on this webserver).

A publication related to this work will soon be available.

Entropy-based Super-resolution Imaging (ESI)

Related publication:

Yahiatene, I., Hennig, S., Müller, M., & Huser, T. (2015).
"Entropy-Based Super-Resolution Imaging (ESI): From Disorder to Fine Detail."
ACS Photonics, 2(8), 1049-1056.

GICA (Gamma-Norm Image Colocalization Algorithm)

Manual

Related publication:

Humpert, F., Yahiatene, I., Lummer, M., Sauer, M., & Huser, T. (2015).
"Quantifying molecular colocalization in live cell fluorescence microscopy."
Journal of biophotonics 8.1-2 (2015): 124-132.